From data to super AI scientist

By scientists, for scientists. Empowering 50 people to achieve the output of 100.

Move beyond paper – make every experiment traceable

Collaborate on experiments in real time

Turn raw data into R&D-ready documents with AI

From chemical structure recognition to intelligent molecular design

From biological sequence analysis to design solutions

Track every compound and sample

Transform SAR and formulation data into better design

Know the true cost of every R&D project

Discover AtomDeep

Solutions for teams across chemistry and biology discovery, pre-clinical, and process development

ELN

Electronic Lab Notebook

Fully AI-integrated, it replaces paper lab notebooks to enhance data quality, retain critical expertise, and ensure compliance with both Chinese and US regulations.

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AI

Al agent

Transform experiment records, project tasks, and document libraries into an on-demand AI knowledge base. Unlock AI superpowers: semantic search, AI dialogue, document generation, and experiment design.

InDraw

Molecule Editor

InDraw offers full compatibility with ChemDraw. Easily draw structures, reactions, DNA/RNA, proteins, and more. Perform calculations and predictions for molecular weight, cLogP, pKa, feed amount, ADMET, 3D modeling, and beyond.

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Registry

Compound & sample management

AtomDeep Registry generates unique identifiers for your compounds, antibodies, nucleic acids, formulations, samples, and more. It centralizes experimental and test results into a unified database, accelerating data- and AI-driven discovery of new drugs and materials.

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Project

Project management

AtomDeep Project replaces traditional tools like Microsoft Project or Excel for project management. Built with AI, multi-dimensional tables, no-code capabilities, and collaborative documents, it brings a new paradigm to managing projects, tasks, costs, documents, and performance.

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Inventory

Inventory management

AtomDeep Inventory replaces traditional Excel-based material management. It supports full lifecycle traceability, unmanned operations, barcode-based inbound and outbound, milligram-level project cost tracking, and full-text and structure searches—reducing redundant procurement costs by 30%

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InPaper

Paper & Patent data mining

InPaper automatically and accurately extracts data from PDF patents and papers—including structures, reactions, and activity data—to fuel AI with high-quality information. Empower your organization to build a literature database with both structure and full-text search capabilities.

InSequence

Biosquence design & editor

InSequence offers full compatibility with SnapGene. It supports visual sequence map analysis, design, and editing—enabling plasmid, antibody, and primer design, sequence alignment, and management of features and enzyme sets.

Serving over 700 leading global customers

Loved by more than 1 million chemistry and biology scientists from enterprises, universities and research institutions.

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From chemistry to biology,

one platform, endless discovery.

Powered by In-House Tools: InDraw (Molecule Editor), InSequence (Biological Sequence Editor), InText (Text Editor), InTable (Spreadsheet Editor), and InForm (Multi-Dimensional Table). Full technical control enables users to create custom templates and workflows—empowering next-gen R&D with best practices and AI-driven insights.

Small molecule innovative drugs Small molecule innovative drugs Antibody innovative drugs Antibody innovative drugs

Why teams choose AtomDeep

By Scientists, For Scientists
By Scientists, For Scientists

Founded by former GSK senior scientist Dr. Guanghui Deng. We speak the language of the lab because we are "By Scientists, For Scientists." Our mission is to transform R&D with data and intelligence, creating a future where every discovery is powered by a Super AI Scientist.

In-House Technical Expertise for Breakthrough Solutions
In-House Technical Expertise for Breakthrough Solutions

Driven by self-developed core technologies, AtomDeep has conquered major technical barriers in scientific research.

Comprehensive Security Protection System
Comprehensive Security Protection System

Data security is the core of our operations. AtomDeep’s defense-in-depth framework spans system layers, secure transmission, and advanced encryption. With flexible local or cloud-based deployment and credentials including ISO27001 and third-party CSV, we deliver a highly reliable environment for auditable and trustworthy research.

International Compliance & Certifications
International Compliance & Certifications

AtomDeep is a products software vendor for international electronic record regulations. We take pride in being the first biotech software provider in NMPA and FDA audits, with over 160 successful cases of dual China-US IND/NDA filings by pharma companies worldwide. Our platform and CSV validation services support system compliance and high audit success rates.

Customer Centricity
Customer Centricity

Guided by our core value of Customer First, AtomDeep has established a professional service team with a rapid response mechanism, including a 30-minute response assurance. We are dedicated to helping users enhance data quality and promote data reuse, ultimately accelerating scientific innovation.

Earning the trust and acclaim of industry-leading clients
Earning the trust and acclaim of industry-leading clients

Recognized by over 700 clients worldwide: from global tech titan Huawei and China’s top pharma player Yangtze River Pharmaceutical to AI-pharmaceutical leader XtalPi. Our partners include ADC powerhouses DualityBio and RemeGen, US-based ADARx, and the renowned French beauty brand Clarins.

All in AI
All in AI

As AI for Science ushers in a new research paradigm, AtomDeep is "All in on AI." We are committed to helping our clients transition from digital to AI-powered laboratories. By building the "Super AI Scientist," we aim to unlock a 100x leap in research productivity.

Frequently Asked Questions

1. Standardized Software
Best for: R&D-driven teams and enterprises with frequently evolving workflows.
Advantages: Rapid deployment, out-of-the-box availability, and high flexibility for configuration. These systems are continuously upgraded; as the provider serves more high-quality clients over time, the software’s features become richer and more stable.
Cost Efficiency: Since R&D costs are shared across hundreds or thousands of clients, the price is often dozens or even hundreds of times lower than customized solutions.
Limitations: It may not cater to highly specific, non-universal requirements, typically covering about 90% of complex user needs.2. Customized Software
Best for: Production-oriented enterprises with fixed, unchanging processes and a heavy emphasis on rigid workflows.

Advantages: Tailor-made to the client’s specific requirements, ensuring a 100% match for current use cases.

Disadvantages: * Inflexibility: The software is locked into the initial requirements. Any future changes require expensive re-development.

Slow & Costly: It features a slow rollout and requires a dedicated internal IT team for maintenance.

Financial Burden: Since the cost cannot be shared, the price is orders of magnitude higher than standardized software.

Hidden Risks: To control costs, vendors often sacrifice software architecture and long-term quality.
Customized Software VS Standardized Software
Fully aligned within 1-2 years Demand Matching Long-term satisfaction of 95% of needs
High Investment Cost Low
Secondary development, long launch cycle Upgrade Capability Continuous upgrades
Custom interfaces Technical Compatibility Standard API interfaces
Gradually being replaced Development Trend Prevailing

Explore the power of AI, digitalization and robotics in AtomDeep

Learn how AtomDeep leverages next-gen intelligent technologies to accelerate your R&D.

Quick Contact contact@atomdeep.com +86 21 5859 5859 +86 21 5859 0900 Weekdays 9:00-18:00 (UTC+8)